Installation
============

Requirements
------------

- Python 3.8 or later
- numpy >= 1.20
- scipy >= 1.7

Optional dependencies
~~~~~~~~~~~~~~~~~~~~~

For biological perturbation analysis:

.. code-block:: bash

   pip install anndata

For supervised metrics:

.. code-block:: bash

   pip install scikit-learn

Install from PyPI
-----------------

.. code-block:: bash

   pip install shesha-geometry

Install with bio extras
-----------------------

.. code-block:: bash

   pip install "shesha-geometry[bio]"

Install from source
-------------------

.. code-block:: bash

   git clone https://github.com/prashantcraju/shesha.git
   cd shesha
   pip install -e .